Publications
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Publications
Papers
*Denotes cofirst authorship
2024
Gorelik M.G., Yakhnin H., Pannuri A., Walker A.C., Pourciau C., Czyz D., Babitzke P., Romeo T. (2023) Multitier regulation of the E. coli extreme acid stress response by CsrA, Journal of Bacteriology doi: https://doi.org/10.1128/jb.00354-23
Nominated as Editor’s pick
2023
Pourciau C., Yakhnin H., Pannuri A., Gorelik M.G., Romeo T., Babitzke P. (2023) CsrA Coordinates the Expression of Ribosome Hibernation and Anti-s Factor Proteins, mBio doi: https://doi.org/10.1128/mbio.02585-23
*Gorelik A.J., *Gorelik M.G., Ridout K.K., Nimarko A., Peisch V., Kuramkote S.R., Low M., Pan T., Singh S., Nrusimha A., Singh M. (2023) Evaluating efficiency and accuracy of deep-learning-based approaches on study selection for psychiatry systematic reviews. Nature Mental Health doi: https://doi.org/10.1038/s44220-023-00109-w
Selected for presentation at the Artificial Intelligence for Mental Health Seminar Series at Oxford
2022
de Crécy-lagard V., Amorin de Hegedus R., Arighi C., Babor J., Bateman A., Blaby I., Blaby-Haas C., Bridge A.J., Burley S.K., Cleveland S., Colwell L.J., Conesa A., Dallago C., Danchin A., de Waard A., Deutschbauer A., Dias R., Ding Y., Fang G., Friedberg I., Gerlt J., Goldford J., Gorelik M.G., Gyori B.M., Henry C., Hutinet G., Jaroch M., Karp P.D., Kondratova L., Lu Z., Marchler-Bauer A., Martin M., McWhite C., Moghe G.D., Monaghan P., Morgat A., Mungall C.J., Natale D.A., Nelson W.C., O’Donoghue S., Orengo C., O’Toole K.H., Radivojac P., Reed C., Roberts R.J., Rodionov D., Rodionova I.A., Rudolf J.D., Saleh L., Sheynkman G., Thibaud-Nissen F., Thomas P.D., Uetz P., Vallenet D., Carter E.W., Weigele P.R., Wood V., Wood-Charlson E.M., Xu J. (2022) A roadmap for the functional annotation of protein families: a community perspective, Database, doi: https://doi.org/10.1093/database/baac062
2021
Nimarko A.F., Gorelik A.J., Carta K.E., Gorelik M.G., Singh M.K. (2021) Neural Correlates of Reward Processing Distinguish Healthy Youth at Familial Risk for Bipolar Disorder from Youth at Familial Risk for Major Depressive Disorder, Translational Psychiatry doi: https://doi.org/10.1038/s41398-022-01800-9
2020
Pourciau C., Lai Y., Gorelik M.G., Babitzke P., Romeo T. “Diverse Mechanisms and Circuitry for Global Regulation by the RNA-Binding Protein CsrA.” Frontiers in Microbiology 11 (2020). https://doi.org/10.3389/fmicb.2020.601352
Gorelik M. G., Gorelik Aaron J., Kathryn K. Ridout, Akua F. Nimarko, Virginia Peisch, Shamanth R. Kuramkote, Michelle Low, et al. “Applying Machine Learning to Increase Efficiency and Accuracy of Meta-Analytic Review.” Bioarxiv, 2020. https://doi.org/10.1101/2020.10.06.314245
Posters
2023
Pourciau C., Yakhnin H., Pannuri A., Gorelik M.G., Romeo T., Babitzke P. (2023) CsrA Coordinates the Expression of Ribosome Hibernation and Anti-s Factor Proteins, RNA 2023
2022
Singh M., Gorelik A.J., Gorelik M.G., Chang K., Gotlib I., Reiss A., Nimarko A., “The Intriguing Role of Thalamic Structure and Function in Youth With and at Familial Risk for Bipolar Disorder”, Biological Psychiatry, 2022
2021
Singh M., Gorelik A.J., Carta K., Gorelik M.G., Chang K., Bruno J., Nimarko A., “Thalamic Structure and Function In Youth with and at Familial Risk for Bipolar Disorder”, ISCTM, 2021
Gorelik M.G., Pannuri A., Pourciau C., Babitzke P., and Romeo T., “CsrA Regulation of the extreme acid stress response in Escherichia coli” World Microbe Forum, 2021
2019
Gorelik M. G., Archana Pannuri, Christine Pourciau, Paul Babitzke, and Tony Romeo. “Transcriptomic Profiles of CsrA::kan Truncation vs. ΔCsrA Strains of Escherichia coli Suggests Novel and More Nuanced Impacts of the Global Regulatory Protein CsrA” ASM, 2020.
Mentored Posters
2024
2021
Wong Samantha, Mark G. Gorelik, Christine Pourciau, Joanne Lai, and Tony Romeo “Bioinformatic analysis of the correlation between the Csr system and the fim, csg and, pga operons regulation of adhesion and biofilm formation in members of the human microbiome”
Groso Christine M., Mark G. Gorelik, Christine Pourciau, Joanne Lai, and Tony Romeo “Bioinformatic analysis of the correlation between the carbon storage regulator system and extreme acid resistance systems in members of the human microbiome”
2020
Bhargava Rohan, Mark G. Gorelik, Alyssa C. Walker, Tony Romeo, Daniel M. Czyz. “Identifying butyrogenic bacteria in the human microbiome. National Institute of Antimicrobial Resistance Research and Education Knowledge Exchange Virtual Poster Session”. Abstract/Talk/Poster. July 30, 2020. First place award in Systems Approaches to Manage Antimicrobial Resistance Session
2019
Whitehead Russel, Mark G. Gorelik, Christine Pourciau, Archana Pannuri, and Tony Romeo. “Global suppression of a global regulatory defect: Transcriptomics analysis to understand how NusE/RpsJ evolution suppresses the growth defect caused by csrA deletion.” UF Undergraduate Symposium, 2019